Article

Neave, EF, Cai, W, Arias, MB, Harper, LR, Riesgo, A and Mariani, S (2023) Trapped DNA fragments in marine sponge specimens unveil North Atlantic deep-sea fish diversity. Proceedings of the Royal Society B: Biological Sciences, 290 (2005). p. 20230771. ISSN 0962-8452

Prasetyo, AP, Murray, JM, Kurniawan, MFAK, Sales, NG, McDevitt, AD and Mariani, S (2023) Shark-dust: Application of high-throughput DNA sequencing of processing residues for trade monitoring of threatened sharks and rays. Conservation Letters. ISSN 1755-263X

Prasetyo, AP, Cusa, M, Murray, JM, Agung, F, Muttaqin, E, Mariani, S and McDevitt, AD (2023) Universal closed-tube barcoding for monitoring the shark and ray trade in megadiverse conservation hotspots. iScience, 26 (7). ISSN 2589-0042

Albonetti, L, Maiello, G, Cariani, A, Carpentieri, P, Ferrari, A, Sbrana, A, Shum, P, Talarico, L, Russo, T and Mariani, S (2023) DNA metabarcoding of trawling bycatch reveals diversity and distribution patterns of sharks and rays in the central Tyrrhenian Sea. ICES Journal of Marine Science. ISSN 1054-3139

Dimitriadis, C, Neave, EF, Shum, P, Mariani, S, D’amen, M and Azzurro, E (2023) First records of Sphyraena chrysotaenia (Klunzinger, 1884) and Diadema setosum (Leske, 1778) in the Marine Protected Area of Zakynthos Island (Ionian Sea, Greece). Acta Adriatica, 64 (1). pp. 83-86. ISSN 0001-5113

Giulia, M, Lorenzo, T, Brodie, C, Paolo, C, Sbrana, A, Shum, P, Mariani, S and Tommaso, R (2023) Net gain: Low-cost, trawl-associated eDNA samplers upscale ecological assessment of marine demersal communities. Environmental DNA. ISSN 2637-4943

Harper, LR, Neave, EF, Sellers, GS, Cunnington, AV, Arias, MB, Craggs, J, MacDonald, B, Riesgo, A and Mariani, S (2023) Optimized DNA isolation from marine sponges for natural sampler DNA metabarcoding. Environmental DNA, 5 (3). pp. 438-461. ISSN 2637-4943

Handley, LL, Blackwell, T, Broadhurst, HA, Clark, K, Davison, PI, England, J, Mariani, S, McDevitt, AD, Pillay, K, Read, D, Walsh, K, Nisbet, A and Creer, S (2022) UK DNA working group eDNA week, January 2022. Environmental DNA, 5 (1). pp. 18-24. ISSN 2637-4943

Collins, RA, Baillie, C, Halliday, NC, Rainbird, S, Sims, DW, Mariani, S and Genner, MJ (2022) Reproduction influences seasonal eDNA variation in a temperate marine fish community. Limnology and Oceanography Letters, 7 (5). pp. 443-449. ISSN 2378-2242

Cai, W, Harper, LR, Neave, EF, Shum, P, Craggs, J, Arias, MB, Riesgo, A and Mariani, S (2022) Environmental DNA persistence and fish detection in captive sponges. Molecular Ecology Resources. ISSN 1755-098X

Cavedon, M, vonHoldt, B, Hebblewhite, M, Hegel, T, Heppenheimer, E, Hervieux, D, Mariani, S, Schwantje, H, Steenweg, R, Watters, M and Musiani, M (2022) Selection of both habitat and genes in specialized and endangered caribou. Conservation Biology. ISSN 0888-8892

Siegenthaler, A, Wangensteen, OS, Benvenuto, C, Lollobrigidi, R and Mariani, S (2022) Niche separation between two dominant crustacean predators in European estuarine soft-bottom habitats. Ecological Indicators, 138. ISSN 1470-160X

Liu, Z, Collins, RA, Baillie, C, Rainbird, S, Brittain, R, Griffiths, AM, Sims, DW, Mariani, S and Genner, MJ (2022) Environmental DNA captures elasmobranch diversity in a temperate marine ecosystem. Environmental DNA. ISSN 2637-4943

Cavedon, M, vonHoldt, B, Hebblewhite, M, Hegel, T, Heppenheimer, E, Hervieux, D, Mariani, S, Schwantje, H, Steenweg, R, Theoret, J, Watters, M and Musiani, M (2022) Genomic legacy of migration in endangered caribou. PLoS Genetics, 18 (2). ISSN 1553-7404

Maiello, G, Talarico, L, Carpentieri, P, De Angelis, F, Franceschini, S, Harper, LR, Neave, EF, Rickards, O, Sbrana, A, Shum, P, Veltre, V, Mariani, S and Russo, T (2022) Little samplers, big fleet: eDNA metabarcoding from commercial trawlers enhances ocean monitoring. Fisheries Research, 249. ISSN 0165-7836

Cusa, M, St John Glew, K, Trueman, C, Mariani, S, Buckley, L, Neat, F and Longo, C (2021) A future for seafood point-of-origin testing using DNA and stable isotope signatures. Reviews in Fish Biology and Fisheries, 32 (2). ISSN 0960-3166

Prasetyo, AP, McDevitt, AD, Murray, JM, Barry, J, Agung, F, Muttaqin, E and Mariani, S (2021) Shark and ray trade in and out of Indonesia: Addressing knowledge gaps on the path to sustainability. Marine Policy, 133. ISSN 0308-597X

Collins, RA, Trauzzi, G, Maltby, KM, Gibson, TI, Ratcliffe, FC, Hallam, J, Rainbird, S, Maclaine, J, Henderson, PA, Sims, DW, Mariani, S and Genner, MJ (2021) Meta-Fish-Lib: A generalised, dynamic DNA reference library pipeline for metabarcoding of fishes. Journal of Fish Biology, 99 (4). pp. 1446-1454. ISSN 1095-8649

D’Alessandro, S and Mariani, S (2021) Sifting environmental DNA metabarcoding data sets for rapid reconstruction of marine food webs. Fish and Fisheries. ISSN 1467-2960

Mariani, S, Fernandez, C, Baillie, C, Magalon, H and Jaquemet, S (2021) Shark and ray diversity, abundance and temporal variation around an Indian Ocean Island, inferred by eDNA metabarcoding. Conservation Science and Practice. ISSN 2578-4854

Cusa, M, Falcao, L, De Jesus, J, Biolatti, C, Blondeel, L, Bracken, FSA, Devriese, L, Garces-Pastor, S, Minoudi, S, Gubili, C, Acutis, PL and Mariani, S (2021) Fish out of water: consumers' unfamiliarity with the appearance of commercial fish species. Sustainability Science, 16 (4). pp. 1313-1322. ISSN 1862-4065

Russo, T, Maiello, G, Talarico, L, Baillie, C, Colosimo, G, D'Andrea, L, Di Maio, F, Fiorentino, F, Franceschini, S, Garofalo, G, Scannella, D, Cataudella, S and Mariani, S (2021) All is fish that comes to the net: metabarcoding for rapid fisheries catch assessment. Ecological Applications. ISSN 1051-0761

Naaum, AM, Cusa, M, Singh, M, Bleicher, Z, Elliott, C, Goodhead, IB, Hanner, RH, Helyar, SJ, Mariani, S, Rice, JE, Wangh, LJ and Sanchez, JA (2021) Validation of FASTFISH-ID: A new commercial platform for rapid fish species authentication via universal closed-tube barcoding. Food Research International, 141. ISSN 0963-9969

Aglieri, G, Baillie, C, Mariani, S, Cattano, C, Calò, A, Turco, G, Spatafora, D, Di Franco, A, Di Lorenzo, M, Guidetti, P and Milazzo, M (2020) Environmental DNA effectively captures functional diversity of coastal fish communities. Molecular Ecology. ISSN 0962-1083

Sales, NG, Wangensteen, OS, Carvalho, DC, Deiner, K, Præbel, K, Coscia, I, McDevitt, AD and Mariani, S (2020) Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding. Science of the Total Environment, 754. ISSN 0048-9697

Pampoulie, C, Gíslason, D, Ólafsdóttir, G, Chosson, V, Halldórsson, SD, Mariani, S, Elvarsson, BÞ, Rasmussen, MH, Iversen, MR, Daníelsdóttir, AK and Víkingsson, GA (2020) Evidence of unidirectional hybridization and second‐generation adult hybrid between the two largest animals on Earth, the fin and blue whales. Evolutionary Applications, 14 (2). pp. 314-321. ISSN 1752-4571

Sales, NG, McKenzie, MB, Drake, J, Harper, LR, Browett, SS, Coscia, I, Wangensteen, OS, Baillie, C, Bryce, E, Dawson, DA, Ochu, E, Hänfling, B, Lawson Handley, L, Mariani, S, Lambin, X, Sutherland, C and McDevitt, AD (2020) Fishing for mammals: Landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from riverine systems. Journal of Applied Ecology. ISSN 0021-8901

Mascolino, S, Mariani, S and Benvenuto, C (2019) Behavioural responses in a congested sea: an observational study on a coastal nest-guarding fish. European Zoological Journal, 86 (1). pp. 504-518. ISSN 2475-0263

Bakker, J, Wangensteen, OS, Baillie, C, Buddo, D, Chapman, DD, Gallagher, AJ, Guttridge, TL, Hertler, H and Mariani, S (2019) Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding. Ecology and Evolution, 9 (24). pp. 14341-14355. ISSN 2045-7758

Baillie, C, Welicky, RL, Hadfield, KA, Smit, NJ, Mariani, S and Beck, R (2019) Hooked on you: shape of attachment structures in cymothoid isopods reflects parasitic strategy. BMC Evolutionary Biology, 19 (1). ISSN 1471-2148

Collins, RA, Bakker, J, Wangensteen, OS, Soto, AZ, Corrigan, L, Sims, DW, Genner, MJ and Mariani, S (2019) Non‐specific amplification compromises environmental DNA metabarcoding with COI. Methods in Ecology and Evolution. ISSN 2041-210X

Mariani, S, Baillie, C, Colosimo, G and Riesgo, A (2019) Sponges as natural environmental DNA samplers. Current Biology, 29 (11). R401-R402. ISSN 0960-9822

Sales, NG, Wangensteen, OS, Carvalho, DC and Mariani, S (2019) Influence of preservation methods, sample medium and sampling time on eDNA recovery in a neotropical river. Environmental DNA, 1 (2). pp. 119-130. ISSN 2637-4943

Waples, RS, Mariani, S and Benvenuto, C (2018) Consequences of sex change for effective population size. Proceedings of the Royal Society B: Biological Sciences, 285 (1893). ISSN 0962-8452

Collins, RA, Wangensteen, OS, O'Gorman, EJ, Mariani, S, Sims, DW and Genner, MJ (2018) Persistence of environmental DNA in marine systems. Communications Biology, 1. ISSN 2399-3642

Siegenthaler, A, Wangensteen, OS, Soto, AZ, Benvenuto, C, Corrigan, L and Mariani, S (2018) Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring. Molecular Ecology Resources, 19 (1). pp. 206-220. ISSN 1755-098X

Siegenthaler, A, Wangensteen, OS, Benvenuto, C, Campos, J and Mariani, S (2018) DNA metabarcoding unveils multiscale trophic variation in a widespread coastal opportunist. Molecular Ecology, 28 (2). pp. 232-249. ISSN 0962-1083

Sales, NG, Mariani, S, Salvador, GN, Pessali, TC and Carvalho, DC (2018) Hidden Diversity Hampers Conservation Efforts in a Highly Impacted Neotropical River System. Frontiers in Genetics, 9 (271). ISSN 1664-8021

Weckworth, BV, Hebblewhite, M, Mariani, S and Musiani, M (2018) Lines on a map: conservation units, meta-population dynamics, and recovery of woodland caribou in Canada. Ecosphere, 9 (7). ISSN 2150-8925

Cawthorn, D-M, Baillie, C and Mariani, S (2018) Generic names and mislabeling conceal high species diversity in global fisheries markets. Conservation Letters, 11 (5). ISSN 1755-263X

Sotelo, CG, Velasco, A, Perez-Martin, R, Kappel, K, Schroeder, U, Verrez-Bagnis, V, Jerome, M, Mendes, R, Silva, H, Mariani, S and Griffiths, A (2018) Tuna labels matter in Europe: Mislabelling rates in different tuna products. PLoS One, 13 (5). ISSN 1932-6203

Boussarie, G, Bakker, J, Wangensteen, OS, Mariani, S, Bonnin, L, Juhel, J-B, Kiszka, JJ, Kulbicki, M, Manel, S, Robbins, WD, Vigliola, L and Mouillot, D (2018) Environmental DNA illuminates the dark diversity of sharks. Science Advances, 4 (5). ISSN 2375-2548

Leon, A, Urso, I, Damalas, D, Martinsohn, J, Zanzi, A, Mariani, S, Sperone, E, Micarelli, P, Garibaldi, F, Megalofonou, P, Bargelloni, L, Franch, R, Macias, D, Prodohl, P, Fitzpatrick, S, Stagioni, M, Tinti, F and Cariani, A (2017) Genetic differentiation and phylogeography of Mediterranean-North Eastern Atlantic blue shark (Prionace glauca, L. 1758) using mitochondrial DNA: panmixia or complex stock structure? PeerJ, 5. ISSN 2167-8359

Bakker, J, Wangensteen, OS, Chapman, DD, Boussarie, G, Buddo, D, Guttridge, TL, Hertler, H, Mouillot, D, Vigliola, L and Mariani, S (2017) Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. Scientific Reports, 7. ISSN 2045-2322

Cawthorn, D-M and Mariani, S (2017) Global trade statistics lack granularity to inform traceability and management of diverse and high-value fishes. Scientific Reports, 7. ISSN 2045-2322

Shum, P, Moore, L, Pampoulie, C, Di Muri, C, Vandamme, S and Mariani, S (2017) Harnessing mtDNA variation to resolve ambiguity in 'Redfish' sold in Europe. PeerJ, 5. ISSN 2167-8359

Benvenuto, C, Coscia, I, Chopelet, J, Sala-Bozano, M and Mariani, S (2017) Ecological and evolutionary consequences of alternative sex-change pathways in fish. Scientific Reports, 7. ISSN 2045-2322

Gubili, C, Mariani, S, Weckworth, BV, Galpern, P, McDevitt, AD, Hebblewhite, M, Nickel, B and Musiani, M (2016) Environmental and anthropogenic drivers of connectivity patterns: A basis for prioritizing conservation efforts for threatened populations. Evolutionary Applications, 10 (2). pp. 199-211. ISSN 1752-4571

Mariani, S, Griffiths, AM, Velasco, A, Kappel, K, Jerome, M, Perez-Martin, RI, Schroeder, U, Verrez-Bagnis, V, Silva, H, Vandamme, SG, Boufana, B, Mendes, R, Shorten, M, Smith, C, Hankard, E, Hook, SA, Weymer, AS, Gunning, D and Sotelo, CG (2015) Low mislabeling rates indicate marked improvements in European seafood market operations. Frontiers in Ecology and the Environment, 13 (10). pp. 536-540. ISSN 1540-9295

Shum, P, Pampoulie, C, Kristinsson, K and Mariani, S (2015) Three-dimensional post-glacial expansion and diversification of an exploited oceanic fish. Molecular Ecology, 24 (14). pp. 3652-3667. ISSN 0962-1083

Weckworth, BV, Musiani, M, DeCesare, NJ, McDevitt, AD, Hebblewhite, M and Mariani, S (2013) Preferred habitat and effective population size drive landscape genetic patterns in an endangered species. Proceedings of the Royal Society B: Biological Sciences, 280 (1769). ISSN 0962-8452